X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2Z8RPDB ENTRY 2Z8R

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.429355% MPD, 0.1M TRIS, pH8.4, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
2.3146.81

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.617α = 90
b = 105.152β = 95.22
c = 100.668γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray277AREA DETECTORSIEMENS HI-STAR2007-01-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEMACSCIENCE

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.526.293.30.05912.41.533725318
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.52.59700.2332.411.14

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2Z8R2.526.1531603170881.910.165680.161570.24169RANDOM21.003
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01-0.010.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.5
r_dihedral_angle_4_deg18.889
r_dihedral_angle_3_deg16.502
r_dihedral_angle_1_deg6.71
r_scangle_it1.434
r_angle_refined_deg1.259
r_scbond_it0.893
r_mcangle_it0.734
r_mcbond_it0.415
r_nbtor_refined0.315
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.5
r_dihedral_angle_4_deg18.889
r_dihedral_angle_3_deg16.502
r_dihedral_angle_1_deg6.71
r_scangle_it1.434
r_angle_refined_deg1.259
r_scbond_it0.893
r_mcangle_it0.734
r_mcbond_it0.415
r_nbtor_refined0.315
r_symmetry_hbond_refined0.256
r_nbd_refined0.224
r_metal_ion_refined0.22
r_symmetry_vdw_refined0.164
r_xyhbond_nbd_refined0.154
r_chiral_restr0.077
r_bond_refined_d0.009
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8952
Nucleic Acid Atoms
Solvent Atoms335
Heterogen Atoms70

Software

Software
Software NamePurpose
REFMACrefinement
SADIEdata collection
SAINTdata reduction
SAINTdata scaling
MOLREPphasing