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Ascorbate Peroxidase R38K mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OAG PDB ENTRY 1OAG
Crystallization Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.707 α = 90 b = 82.707 β = 90 c = 75.026 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MULTILAYER 2007-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 27.2 99.9 0.04 17.8 3.4 20947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.7 0.22 3.6 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OAG 1.9 27.2 20947 1077 99.9 0.17838 0.17517 0.2103 0.24074 0.2576 RANDOM 19.283
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.631 r_dihedral_angle_4_deg 18.706 r_dihedral_angle_3_deg 12.768 r_angle_refined_deg 6.2 r_dihedral_angle_1_deg 6.2 r_scangle_it 4.359 r_scbond_it 3.184 r_mcangle_it 1.792 r_mcbond_it 1.258 r_nbtor_other 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.631 r_dihedral_angle_4_deg 18.706 r_dihedral_angle_3_deg 12.768 r_angle_refined_deg 6.2 r_dihedral_angle_1_deg 6.2 r_scangle_it 4.359 r_scbond_it 3.184 r_mcangle_it 1.792 r_mcbond_it 1.258 r_nbtor_other 0.3 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.091 r_bond_refined_d 0.016 r_bond_other_d r_angle_other_deg r_gen_planes_refined r_gen_planes_other r_nbd_other r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1899 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling REFMAC phasing