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Structure of the TBL1 tetramerisation domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UUJ PDB ENTRY 1UUJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 17% PEG 4000, 0.2 M MGCL2, 0.1 M TRIS/HCL PH8.5, pH 7.4
Crystal Properties Matthews coefficient Solvent content 2.52 51.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.541 α = 90 b = 59.541 β = 90 c = 193.88 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 96 99.9 0.07 15.1 6.5 10905
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.4 3.9 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UUJ 2.22 51.57 10313 523 99.82 0.23854 0.23723 0.2379 0.26437 0.2583 RANDOM 39.261
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.44 0.89 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.4 r_dihedral_angle_3_deg 19.658 r_dihedral_angle_1_deg 13.25 r_dihedral_angle_4_deg 3.739 r_scangle_it 2.587 r_scbond_it 1.629 r_angle_refined_deg 1.494 r_mcangle_it 1.344 r_mcbond_it 0.858 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.4 r_dihedral_angle_3_deg 19.658 r_dihedral_angle_1_deg 13.25 r_dihedral_angle_4_deg 3.739 r_scangle_it 2.587 r_scbond_it 1.629 r_angle_refined_deg 1.494 r_mcangle_it 1.344 r_mcbond_it 0.858 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.181 r_symmetry_hbond_refined 0.16 r_chiral_restr 0.126 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1034 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing