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Crystal structure of BHRF1:Bak BH3 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V6Q PDB ENTRY 2V6Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.4 1.6 M NANO3, 50 MM MALIC ACID PH 4.4
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.387 α = 90 b = 62.387 β = 90 c = 93.729 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 99.5 0.06 33.9 10 12945 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.12 95.8 0.5 2.2 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V6Q 2.05 19.95 12943 668 99.56 0.18505 0.18352 0.1839 0.21696 0.2203 RANDOM 47.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.01 r_dihedral_angle_4_deg 19.759 r_dihedral_angle_3_deg 17.682 r_dihedral_angle_1_deg 7.646 r_scangle_it 4.548 r_scbond_it 3.074 r_mcangle_it 1.948 r_angle_refined_deg 1.843 r_mcbond_it 1.138 r_chiral_restr 0.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.01 r_dihedral_angle_4_deg 19.759 r_dihedral_angle_3_deg 17.682 r_dihedral_angle_1_deg 7.646 r_scangle_it 4.548 r_scbond_it 3.074 r_mcangle_it 1.948 r_angle_refined_deg 1.843 r_mcbond_it 1.138 r_chiral_restr 0.138 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1419 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement PHASER phasing