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A MICROMOLAR O-SULFATED THIOHYDROXIMATE INHIBITOR BOUND TO PLANT MYROSINASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E4M PDB ENTRY 1E4M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 TRIS-HCL PH 8, 68 % SAT AMMONIUM SULFATE; PROTEIN IN HEPES PH 6.5, 150 MM NACL, 0.02 MM ZNSO4; HANGING DROPS 2 AND 2 UL
Crystal Properties Matthews coefficient Solvent content 2.56 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.245 α = 90 b = 137.567 β = 90 c = 80.723 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 80.85 99.7 0.08 5.9 4.63 99631 15.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 98.4 0.38 1.71 3.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1E4M 1.6 68.78 94531 5075 99.84 0.14368 0.14257 0.1533 0.16408 0.1742 RANDOM 12.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.636 r_dihedral_angle_4_deg 13.544 r_dihedral_angle_3_deg 11.154 r_scangle_it 6.503 r_dihedral_angle_1_deg 6.264 r_scbond_it 5.507 r_angle_refined_deg 2.574 r_mcangle_it 2.533 r_angle_other_deg 1.662 r_mcbond_it 1.516
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.636 r_dihedral_angle_4_deg 13.544 r_dihedral_angle_3_deg 11.154 r_scangle_it 6.503 r_dihedral_angle_1_deg 6.264 r_scbond_it 5.507 r_angle_refined_deg 2.574 r_mcangle_it 2.533 r_angle_other_deg 1.662 r_mcbond_it 1.516 r_mcbond_other 0.539 r_nbd_refined 0.374 r_symmetry_hbond_refined 0.32 r_symmetry_vdw_other 0.289 r_symmetry_vdw_refined 0.242 r_xyhbond_nbd_refined 0.205 r_nbd_other 0.202 r_nbtor_refined 0.198 r_chiral_restr 0.174 r_metal_ion_other 0.1 r_nbtor_other 0.097 r_xyhbond_nbd_other 0.06 r_bond_refined_d 0.03 r_gen_planes_refined 0.015 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4007 Nucleic Acid Atoms Solvent Atoms 764 Heterogen Atoms 386
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling