2WFA

Structure of Beta-Phosphoglucomutase inhibited with Beryllium trifluoride, in an open conformation.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.528-29 % PEG 4000 AND 200 MM NA ACETATE, pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.141.08

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.3α = 90
b = 57.3β = 90
c = 75γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDGE211MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6520980.116.63.727584316.4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.7494.70.681.73.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.652026110138597.30.2040.2020.237RANDOM12.78
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.090.86-0.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.037
r_dihedral_angle_3_deg15.102
r_dihedral_angle_4_deg12.928
r_dihedral_angle_1_deg7.379
r_scangle_it2.621
r_scbond_it1.524
r_angle_refined_deg1.137
r_mcangle_it0.932
r_angle_other_deg0.83
r_mcbond_it0.493
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.037
r_dihedral_angle_3_deg15.102
r_dihedral_angle_4_deg12.928
r_dihedral_angle_1_deg7.379
r_scangle_it2.621
r_scbond_it1.524
r_angle_refined_deg1.137
r_mcangle_it0.932
r_angle_other_deg0.83
r_mcbond_it0.493
r_mcbond_other0.106
r_chiral_restr0.063
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1708
Nucleic Acid Atoms
Solvent Atoms188
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing