☰ Navigation Tabs
WT PCSK9-DELTAC BOUND TO WT EGF-A OF LDLR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QTW PDB ENTRY 2QTW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1M HEPES PH 7.5, 10% (V/V) 2-PROPANOL, 20% (W/V) PEG 4000
Crystal Properties Matthews coefficient Solvent content 4.1 70
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.004 α = 90 b = 83.004 β = 90 c = 211.566 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2008-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 45 99.9 0.13 13.4 6.4 29902 3.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 99.9 0.68 2.1 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2QTW 2.4 45 28296 1512 99.87 0.21719 0.21524 0.2132 0.25421 0.253 RANDOM 26.756
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 1.07 -2.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.082 r_dihedral_angle_3_deg 16.846 r_dihedral_angle_4_deg 15.463 r_dihedral_angle_1_deg 6.307 r_scangle_it 1.647 r_angle_refined_deg 1.228 r_scbond_it 0.975 r_mcangle_it 0.807 r_mcbond_it 0.449 r_nbtor_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.082 r_dihedral_angle_3_deg 16.846 r_dihedral_angle_4_deg 15.463 r_dihedral_angle_1_deg 6.307 r_scangle_it 1.647 r_angle_refined_deg 1.228 r_scbond_it 0.975 r_mcangle_it 0.807 r_mcbond_it 0.449 r_nbtor_refined 0.293 r_symmetry_vdw_refined 0.26 r_symmetry_hbond_refined 0.211 r_nbd_refined 0.187 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.079 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3145 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing