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anti trimeric Lewis X Fab54-5C10-A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UZ6 PDB ENTRY 1UZ6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 0.1 M NA CITRATE PH 4, 11% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.2 42.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.384 α = 90 b = 161.015 β = 103.07 c = 53.48 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 28.7 99.9 0.06 18.5 3.7 29262 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.24 5.2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UZ6 2.5 25 27751 1470 100 0.206 0.203 0.2018 0.26 0.258 RANDOM 42.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.02 -0.59 1.25 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.978 r_dihedral_angle_1_deg 29.078 r_dihedral_angle_3_deg 17.789 r_dihedral_angle_4_deg 17.6 r_mcangle_it 6.19 r_scangle_it 5.449 r_mcbond_it 4.175 r_scbond_it 3.582 r_angle_refined_deg 1.668 r_chiral_restr 0.377
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.978 r_dihedral_angle_1_deg 29.078 r_dihedral_angle_3_deg 17.789 r_dihedral_angle_4_deg 17.6 r_mcangle_it 6.19 r_scangle_it 5.449 r_mcbond_it 4.175 r_scbond_it 3.582 r_angle_refined_deg 1.668 r_chiral_restr 0.377 r_nbtor_refined 0.304 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.219 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.157 r_bond_refined_d 0.02 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6581 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing