2VFA

Crystal structure of a chimera of Plasmodium falciparum and human hypoxanthine-guanine phosphoribosyl transferases


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
180.1M TRIS PH 8.0, 2.0M AMMONIUM SULPHATE
Crystal Properties
Matthews coefficientSolvent content
3.4764.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 161.811α = 90
b = 161.811β = 90
c = 161.811γ = 90
Symmetry
Space GroupI 2 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHOSMIC MIRROR2003-09-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR591

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8301000.1128.513.817496
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.951000.892.713

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HMP2.8501649391899.80.2330.230.278RANDOM54.96
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.01
r_dihedral_angle_3_deg18.644
r_dihedral_angle_4_deg12.204
r_dihedral_angle_1_deg4.759
r_angle_refined_deg0.937
r_scangle_it0.637
r_mcangle_it0.425
r_scbond_it0.388
r_nbtor_refined0.306
r_mcbond_it0.236
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.01
r_dihedral_angle_3_deg18.644
r_dihedral_angle_4_deg12.204
r_dihedral_angle_1_deg4.759
r_angle_refined_deg0.937
r_scangle_it0.637
r_mcangle_it0.425
r_scbond_it0.388
r_nbtor_refined0.306
r_mcbond_it0.236
r_symmetry_hbond_refined0.223
r_nbd_refined0.182
r_symmetry_vdw_refined0.182
r_xyhbond_nbd_refined0.128
r_chiral_restr0.059
r_bond_refined_d0.006
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3112
Nucleic Acid Atoms
Solvent Atoms82
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing