2V17

Structure of the complex of antibody MN423 with a fragment of tau protein


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5CRYSTALS WERE GROWN FROM 3 UL DROPS CONTAINING 10MG/ML OF PROTEIN, 15 % PEG1000, 100MM HEPES, PH 7.2
Crystal Properties
Matthews coefficientSolvent content
2.345.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.541α = 90
b = 36.808β = 113.93
c = 85.543γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHMIRRORS2006-02-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7BEMBL/DESY, HAMBURGBW7B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.652099.80.0720.13.6494642
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.6899.20.283.73.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1NBV1.6579.0646957250499.70.160.1560.218RANDOM13.25
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.310.20.15-0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.09
r_scangle_it4.267
r_scbond_it2.937
r_mcangle_it2.218
r_angle_refined_deg1.663
r_mcbond_it1.311
r_angle_other_deg1.217
r_symmetry_vdw_other0.339
r_nbd_other0.27
r_symmetry_vdw_refined0.262
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.09
r_scangle_it4.267
r_scbond_it2.937
r_mcangle_it2.218
r_angle_refined_deg1.663
r_mcbond_it1.311
r_angle_other_deg1.217
r_symmetry_vdw_other0.339
r_nbd_other0.27
r_symmetry_vdw_refined0.262
r_nbd_refined0.252
r_xyhbond_nbd_refined0.222
r_symmetry_hbond_refined0.193
r_chiral_restr0.182
r_nbtor_other0.088
r_bond_refined_d0.016
r_gen_planes_other0.009
r_gen_planes_refined0.008
r_bond_other_d0.003
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3365
Nucleic Acid Atoms
Solvent Atoms702
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing