☰ Navigation Tabs
Structure of the complex of antibody MN423 with a fragment of tau protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NBV PDB ENTRY 1NBV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 CRYSTALS WERE GROWN FROM 3 UL DROPS CONTAINING 10MG/ML OF PROTEIN, 15 % PEG1000, 100MM HEPES, PH 7.2
Crystal Properties Matthews coefficient Solvent content 2.3 45.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.541 α = 90 b = 36.808 β = 113.93 c = 85.543 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2006-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 99.8 0.07 20.1 3.6 49464 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 99.2 0.28 3.7 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NBV 1.65 79.06 46957 2504 99.7 0.16 0.156 0.1695 0.218 0.2278 RANDOM 13.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.2 0.15 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.09 r_scangle_it 4.267 r_scbond_it 2.937 r_mcangle_it 2.218 r_angle_refined_deg 1.663 r_mcbond_it 1.311 r_angle_other_deg 1.217 r_symmetry_vdw_other 0.339 r_nbd_other 0.27 r_symmetry_vdw_refined 0.262
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.09 r_scangle_it 4.267 r_scbond_it 2.937 r_mcangle_it 2.218 r_angle_refined_deg 1.663 r_mcbond_it 1.311 r_angle_other_deg 1.217 r_symmetry_vdw_other 0.339 r_nbd_other 0.27 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.252 r_xyhbond_nbd_refined 0.222 r_symmetry_hbond_refined 0.193 r_chiral_restr 0.182 r_nbtor_other 0.088 r_bond_refined_d 0.016 r_gen_planes_other 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3365 Nucleic Acid Atoms Solvent Atoms 702 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing