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C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WSU PDB ENTRY 1WSU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 MES PH5.5, PEG20K 18%, ETHYLENE GLYCOL 10%, NACL 0.1M, SPERMIDINE 20MM, pH 5.50
Crystal Properties Matthews coefficient Solvent content 3.4 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.074 α = 90 b = 119.843 β = 100.05 c = 50.461 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU CCD MIRRORS 2005-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 97.3 0.07 14.2 3.6 39541
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 79.7 0.36 2.1 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WSU 2.31 50 35981 3558 96.8 0.204 0.2 0.1996 0.238 0.2381 RANDOM 22.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.74 0.33 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.207 r_dihedral_angle_4_deg 17.927 r_dihedral_angle_3_deg 16.592 r_dihedral_angle_1_deg 5.768 r_scangle_it 2.135 r_scbond_it 1.445 r_angle_refined_deg 1.405 r_angle_other_deg 0.928 r_mcangle_it 0.889 r_mcbond_it 0.762
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.207 r_dihedral_angle_4_deg 17.927 r_dihedral_angle_3_deg 16.592 r_dihedral_angle_1_deg 5.768 r_scangle_it 2.135 r_scbond_it 1.445 r_angle_refined_deg 1.405 r_angle_other_deg 0.928 r_mcangle_it 0.889 r_mcbond_it 0.762 r_symmetry_hbond_refined 0.292 r_symmetry_vdw_other 0.243 r_nbd_other 0.206 r_nbtor_refined 0.193 r_xyhbond_nbd_refined 0.192 r_nbd_refined 0.189 r_symmetry_vdw_refined 0.124 r_nbtor_other 0.084 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3256 Nucleic Acid Atoms 976 Solvent Atoms 292 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing