2RVO

Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2	100% D2O	50	6.5	ambient	288
2	2D 1H-1H TOCSY	0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2	100% D2O	50	6.5	ambient	288
3	2D 1H-13C HSQC	0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2	100% D2O	50	6.5	ambient	288
4	2D 1H-13C HSQC	0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2	100% D2O	50	6.5	ambient	288
5	2D 1H-13C HSQC	0.18 mM [U-13C; U-15N]-Ade RNA (34-MER)-3, 0.19 mM [U-13C; U-15N]-Gua RNA (34-MER)-4	95% H2O/5% D2O	50	6.5	ambient	288
6	2D 1H-13C TROSY	0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2	100% D2O	50	6.5	ambient	288
7	2D 1H-13C TROSY	0.3 mM RNA (34-MER)-1, 0.26 mM [U-100% 13C; U-100% 15N] RNA (34-MER)-2	100% D2O	50	6.5	ambient	288

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	DRX	600
3	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	11
Representative Model	1 (minimized average structure)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	2.1	Bruker Biospin
2	processing	TopSpin	2.1	Bruker Biospin
3	structure solution	CNSSOLVE	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
4	refinement	CNSSOLVE	1.3	Brunger, Adams, Clore, Gros, Nilges and Read
5	peak picking	Sparky	3.114	Goddard
6	grid search	X-PLOR NIH	2.32	Schwieters, Kuszewski, Tjandra and Clore