☰ Navigation Tabs
c-Jun N-terminal Kinase 3 with 3,5-Disubstituted Quinoline inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JNK PDB Entry 1JNK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.5 298 25-32% PEG 3350, 100mM NaCl, 1mM AMP-PCP, 2mM MgCl2, 0.4mM Zwittergent 314, 10%(v/v) ethylene glycol, pH 5.5, microbatch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.08 40.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.318 α = 90 b = 81.344 β = 90 c = 123.76 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2007-04-10 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.997 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.27 50 99.2 0.056 15.6 6.9 32372 41.67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.27 2.35 93.9 0.507 4.7 3005
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB Entry 1JNK 2.4 38.63 27603 1390 99.84 0.209 0.205 0.2759 0.29 0.2896 RANDOM 45.866
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 -0.26 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.241 r_dihedral_angle_4_deg 19.606 r_dihedral_angle_3_deg 18.469 r_dihedral_angle_1_deg 7.83 r_scangle_it 3.715 r_scbond_it 2.519 r_angle_refined_deg 1.944 r_mcangle_it 1.62 r_mcbond_it 1.048 r_symmetry_hbond_refined 0.377
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.241 r_dihedral_angle_4_deg 19.606 r_dihedral_angle_3_deg 18.469 r_dihedral_angle_1_deg 7.83 r_scangle_it 3.715 r_scbond_it 2.519 r_angle_refined_deg 1.944 r_mcangle_it 1.62 r_mcbond_it 1.048 r_symmetry_hbond_refined 0.377 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.186 r_chiral_restr 0.139 r_bond_refined_d 0.025 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5362 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms 125
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction PHASER phasing