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Crystal Structure of mouse ADP-ribosylhydrolase 3 (mARH3)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FOZ pdb entry 2FOZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 PEG 4000, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.97 37.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.877 α = 90 b = 60.096 β = 90.09 c = 91.782 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.81 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 93.8 0.077 0.042 6.8 51153
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 89.2 0.8 0.04 2.5 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT pdb entry 2FOZ 1.8 30 50111 994 93.73 0.16794 0.16736 0.1757 0.19761 0.2055 RANDOM 15.011
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 -0.32 -1 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.331 r_dihedral_angle_4_deg 19.879 r_dihedral_angle_3_deg 14.59 r_dihedral_angle_1_deg 6.102 r_scangle_it 5.511 r_scbond_it 4.049 r_mcangle_it 1.503 r_angle_refined_deg 1.457 r_mcbond_it 1.142 r_angle_other_deg 1.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.331 r_dihedral_angle_4_deg 19.879 r_dihedral_angle_3_deg 14.59 r_dihedral_angle_1_deg 6.102 r_scangle_it 5.511 r_scbond_it 4.049 r_mcangle_it 1.503 r_angle_refined_deg 1.457 r_mcbond_it 1.142 r_angle_other_deg 1.131 r_symmetry_vdw_other 0.323 r_symmetry_vdw_refined 0.231 r_nbd_refined 0.226 r_mcbond_other 0.223 r_nbd_other 0.188 r_nbtor_refined 0.184 r_symmetry_hbond_refined 0.156 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.094 r_nbtor_other 0.089 r_bond_refined_d 0.016 r_xyhbond_nbd_other 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5142 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection DENZO data reduction SCALEPACK data scaling MOLREP phasing