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Crystal Structure of GRIP1 PDZ12 in Complex with the Fras1 Peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 0.2M magnesium acetate, 0.1M sodium cacodylate pH 6.5, 20% PEG 8K, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.15 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.1 α = 90 b = 75.925 β = 90 c = 126.38 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2007-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 26.157 99.9 0.06 0.06 11.1 8.2 25986
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 99.8 0.355 0.355 2.2 5.6 3700
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 26.15 25976 1344 99.96 0.202 0.199 0.247 0.2256 RANDOM 47.001
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.47 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.234 r_dihedral_angle_4_deg 14.585 r_dihedral_angle_3_deg 14.002 r_dihedral_angle_1_deg 5.685 r_scangle_it 4.12 r_scbond_it 2.607 r_mcangle_it 1.992 r_mcbond_it 1.148 r_angle_refined_deg 1.087 r_nbtor_refined 0.292
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.234 r_dihedral_angle_4_deg 14.585 r_dihedral_angle_3_deg 14.002 r_dihedral_angle_1_deg 5.685 r_scangle_it 4.12 r_scbond_it 2.607 r_mcangle_it 1.992 r_mcbond_it 1.148 r_angle_refined_deg 1.087 r_nbtor_refined 0.292 r_symmetry_vdw_refined 0.24 r_nbd_refined 0.179 r_xyhbond_nbd_refined 0.127 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3008 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 8
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection