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Crystal structure of C-terminal domain of transcription-repair coupling factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 1.6 M Sodium citrate pH 6.5, temperature 298K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 3.09 60.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.891 α = 90 b = 84.891 β = 90 c = 122.021 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97930 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50 100 0.127 4.6 19.4 5156 5156
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 100 0.817 0.707 3.24 19.1 493
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.1 42.45 5117 5117 234 99.86 0.187 0.187 0.184 0.1822 0.243 0.2424 RANDOM 49.754
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.22 -0.45 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.16 r_dihedral_angle_3_deg 20.022 r_dihedral_angle_4_deg 16.06 r_scangle_it 10.02 r_mcangle_it 7.773 r_scbond_it 6.656 r_dihedral_angle_1_deg 5.624 r_mcbond_it 5.223 r_angle_refined_deg 1.116 r_nbtor_refined 0.351
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.16 r_dihedral_angle_3_deg 20.022 r_dihedral_angle_4_deg 16.06 r_scangle_it 10.02 r_mcangle_it 7.773 r_scbond_it 6.656 r_dihedral_angle_1_deg 5.624 r_mcbond_it 5.223 r_angle_refined_deg 1.116 r_nbtor_refined 0.351 r_symmetry_hbond_refined 0.351 r_symmetry_vdw_refined 0.345 r_nbd_refined 0.275 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1329 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection HKL-2000 data reduction SHELXD phasing SHELXE model building RESOLVE phasing