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Crystal structure of human Importin-beta (127-876) in complex with the IBB-domain of Snurportin1 (1-65)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.55 283 sodium citrate, Ammonium SO4, Ethanol, NaCl, Tris, pH 5.55, VAPOR DIFFUSION, SITTING DROP, temperature 283K
Crystal Properties Matthews coefficient Solvent content 2.91 57.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.22 α = 90 b = 79.07 β = 90 c = 208.46 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.84 3104.26 100 0.192 9.18 4.82 25868 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.84 2.92 100 0.626 2.55 4.92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.84 15 25868 24343 1304 99.99 0.23526 0.23279 0.23 0.28247 0.278 RANDOM 31.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 2.59 -1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.021 r_dihedral_angle_4_deg 18.228 r_dihedral_angle_3_deg 16.688 r_dihedral_angle_1_deg 3.887 r_angle_refined_deg 0.881 r_scangle_it 0.472 r_mcangle_it 0.376 r_nbtor_refined 0.284 r_scbond_it 0.273 r_mcbond_it 0.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.021 r_dihedral_angle_4_deg 18.228 r_dihedral_angle_3_deg 16.688 r_dihedral_angle_1_deg 3.887 r_angle_refined_deg 0.881 r_scangle_it 0.472 r_mcangle_it 0.376 r_nbtor_refined 0.284 r_scbond_it 0.273 r_mcbond_it 0.207 r_nbd_refined 0.171 r_symmetry_vdw_refined 0.138 r_xyhbond_nbd_refined 0.088 r_chiral_restr 0.057 r_symmetry_hbond_refined 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6030 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 10
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection