2QH2

Solution structure of the CR7 terminal hairpin loop from human telomerase RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY (11echo and watergate)1 mM unlabeled RNA, 10 mM sodium phosphate buffer, pH 6.3, 200 mM KCl, 50 uM EDTA, 0.2% sodium azide; 95% H2O, 5% D2O or 100% D2O95% H2O, 5% D2O or 100% D2O200 mM KCl6.3ambient283
22D NOESY, 2D TOCSY, Natural abundance 2D 13C HSQC1 mM unlabeled RNA, 10 mM sodium phosphate buffer, pH 6.3, 200 mM KCl, 50 uM EDTA, 0.2% sodium azide; 95% H2O, 5% D2O or 100% D2O95% H2O, 5% D2O or 100% D2O200 mM KCl6.3ambient293
32D 15N-HMQC, 2D 15N-CPMG-NOESY, 2D JNN-HNN-COSY1 mM 13C, 15N labeled RNA, 10 mM sodium phosphate buffer, pH 6.3, 200 mM KCl, 50 uM EDTA, 0.2% sodium azide; 95% H2O, 5% D2O or 100% D2O95% H2O, 5% D2O or 100% D2O200 mM KCl6.3ambient283
42D 13C-HSQC, 2D HCCH-COCSY, 3D HCCH-TOCSY, 3D NOESY-HMQC, 2D 31P spin echo difference HCCH/HSQC/HMQC, 2D CT-CE-HSQC1 mM 13C, 15N labeled RNA, 10 mM sodium phosphate buffer, pH 6.3, 200 mM KCl, 50 uM EDTA, 0.2% sodium azide; 95% H2O, 5% D2O or 100% D2O95% H2O, 5% D2O or 100% D2O200 mM KCl6.3ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDPX500
2BrukerDRX600
3BrukerAvance800
NMR Refinement
MethodDetailsSoftware
simulated annealingStructures are based on 526 NOE-derived distance contraints, 90 dihedral angle restraints, 24 distance restraints from hydrogen bonds, and 19 H-C residual dipolar couplingsXWINNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy, no restraint violation, consistent with residual dipolar couplings
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXWINNMR2.6Bruker
2processingXWINNMR2.6Bruker
3data analysisAURELIA3.108Brunger
4structure solutionX-PLOR3.851NIH
5refinementX-PLOR3.851NIH