2Q9X

Crystal structure of highly stable mutant Q40P/S47I/H93G of human fibroblast growth factor-1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.529315% PEG 8000, 100mM TrisHCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8232.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.61α = 90
b = 57.599β = 90
c = 57.716γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2006-09-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.86980ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.634.611000.0970.0975.24158331326511.93
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.791000.3560.3561.941866

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1RG81.734.6158331321265199.910.2080.2090.2070.245RANDOM10.686
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.13-0.04-0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.938
r_dihedral_angle_3_deg13.671
r_dihedral_angle_4_deg11.545
r_dihedral_angle_1_deg7.421
r_scangle_it3.191
r_scbond_it2.216
r_angle_refined_deg1.533
r_mcangle_it1.498
r_mcbond_it0.959
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.938
r_dihedral_angle_3_deg13.671
r_dihedral_angle_4_deg11.545
r_dihedral_angle_1_deg7.421
r_scangle_it3.191
r_scbond_it2.216
r_angle_refined_deg1.533
r_mcangle_it1.498
r_mcbond_it0.959
r_nbtor_refined0.307
r_symmetry_hbond_refined0.216
r_nbd_refined0.209
r_symmetry_vdw_refined0.157
r_xyhbond_nbd_refined0.126
r_chiral_restr0.112
r_bond_refined_d0.015
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1007
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms6

Software

Software
Software NamePurpose
SCALAdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345dtbdata collection
MOSFLMdata reduction