2Q0S

Structure of the Inhibitor bound form of M. Smegmatis Aryl Esterase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8298100mM Tris (pH 8.0), 2M ammonium sulfate, 2% PEG 400., VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1743.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.754α = 104.1
b = 80.096β = 112.1
c = 85.974γ = 97.4
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102004-07-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.1ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.55095.40.0420.04230.8240647
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTNative enzyme1.5502285961193095.360.13540.134140.15977RANDOM10.475
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.250.530.450.350.590.16
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.766
r_dihedral_angle_4_deg18.786
r_dihedral_angle_3_deg10.74
r_dihedral_angle_1_deg5.61
r_scangle_it3.344
r_scbond_it2.273
r_angle_refined_deg1.627
r_mcangle_it1.312
r_mcbond_it1.132
r_angle_other_deg0.904
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.766
r_dihedral_angle_4_deg18.786
r_dihedral_angle_3_deg10.74
r_dihedral_angle_1_deg5.61
r_scangle_it3.344
r_scbond_it2.273
r_angle_refined_deg1.627
r_mcangle_it1.312
r_mcbond_it1.132
r_angle_other_deg0.904
r_symmetry_vdw_other0.268
r_mcbond_other0.255
r_nbd_refined0.229
r_symmetry_vdw_refined0.189
r_nbd_other0.183
r_nbtor_refined0.182
r_symmetry_hbond_refined0.138
r_xyhbond_nbd_refined0.114
r_chiral_restr0.109
r_nbtor_other0.085
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13144
Nucleic Acid Atoms
Solvent Atoms2134
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing