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CRYSTAL STRUCTURE OF a protein belonging to the UPF0052 (SE_0549) FROM STAPHYLOCOCCUS EPIDERMIDIS ATCC 12228 AT 2.00 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 NANODROP, 0.2M Di-ammonium hydrogen phosphate, 25.0% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.56 65.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.666 α = 90 b = 136.814 β = 90 c = 55.957 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-03-02 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97931, 0.91837 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.185 98.8 0.101 0.101 6.2 4.1 35353 27.46
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.7 0.87 0.87 0.8 4.1 2601
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.185 35338 1774 98.46 0.173 0.173 0.171 0.1804 0.212 0.2189 RANDOM 29.661
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.16 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.713 r_dihedral_angle_4_deg 23.605 r_dihedral_angle_3_deg 14.138 r_scangle_it 8.808 r_scbond_it 6.042 r_dihedral_angle_1_deg 5.817 r_mcangle_it 3.567 r_mcbond_it 2.37 r_angle_refined_deg 1.48 r_angle_other_deg 0.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.713 r_dihedral_angle_4_deg 23.605 r_dihedral_angle_3_deg 14.138 r_scangle_it 8.808 r_scbond_it 6.042 r_dihedral_angle_1_deg 5.817 r_mcangle_it 3.567 r_mcbond_it 2.37 r_angle_refined_deg 1.48 r_angle_other_deg 0.847 r_mcbond_other 0.597 r_symmetry_hbond_refined 0.224 r_nbd_refined 0.206 r_symmetry_vdw_other 0.185 r_nbtor_refined 0.171 r_nbd_other 0.17 r_xyhbond_nbd_refined 0.153 r_symmetry_vdw_refined 0.123 r_chiral_restr 0.091 r_nbtor_other 0.085 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2421 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms 5
Software Software Software Name Purpose MolProbity model building SOLVE phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction CCP4 data scaling