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Crystal structure of a cystatin-like fold protein (bxe_b1374) from burkholderia xenovorans lb400 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 277 NANODROP, 0.8M K2HPO4, 0.2M Li2SO4, 1.2M NaH2PO4, 0.1M CAPS pH 10.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.72 66.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.518 α = 90 b = 80.518 β = 90 c = 116.256 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2007-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97891 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.894 98.9 0.133 0.133 4.9 7.4 29640
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 98 0.76 0.76 1 7.5 2136
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 29.894 29613 1504 98.51 0.194 0.194 0.192 0.201 0.236 0.239 RANDOM 35.937
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.41 1.2 2.41 -3.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.635 r_dihedral_angle_3_deg 14.714 r_dihedral_angle_4_deg 9.957 r_scangle_it 6.649 r_dihedral_angle_1_deg 5.72 r_scbond_it 5.093 r_mcangle_it 2.67 r_mcbond_it 2.066 r_angle_refined_deg 1.501 r_angle_other_deg 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.635 r_dihedral_angle_3_deg 14.714 r_dihedral_angle_4_deg 9.957 r_scangle_it 6.649 r_dihedral_angle_1_deg 5.72 r_scbond_it 5.093 r_mcangle_it 2.67 r_mcbond_it 2.066 r_angle_refined_deg 1.501 r_angle_other_deg 0.89 r_mcbond_other 0.41 r_symmetry_vdw_other 0.232 r_nbd_other 0.208 r_nbd_refined 0.201 r_nbtor_refined 0.181 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.155 r_symmetry_vdw_refined 0.119 r_chiral_restr 0.092 r_nbtor_other 0.088 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2029 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 66
Software Software Software Name Purpose MolProbity model building SOLVE phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction CCP4 data scaling