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Crystal structure of InlA S192N/hEC1 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O6S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 PEG 4000, CaCl2, Na-Acetate, Tris/MES, pH 6.0, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.06 40.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.465 α = 90 b = 68.901 β = 90 c = 132.358 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 1.05 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 98.8 0.057 27 55828
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 95 0.275
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1O6S 1.7 65.94 52919 2815 98.64 0.15874 0.156 0.1633 0.21106 RANDOM 10.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.91 0.95
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.029 r_dihedral_angle_1_deg 4.41 r_scbond_it 4.378 r_mcangle_it 3.907 r_mcbond_it 2.999 r_angle_refined_deg 2.006 r_angle_other_deg 1.68 r_nbd_other 0.189 r_nbd_refined 0.187 r_symmetry_vdw_refined 0.187
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.029 r_dihedral_angle_1_deg 4.41 r_scbond_it 4.378 r_mcangle_it 3.907 r_mcbond_it 2.999 r_angle_refined_deg 2.006 r_angle_other_deg 1.68 r_nbd_other 0.189 r_nbd_refined 0.187 r_symmetry_vdw_refined 0.187 r_symmetry_vdw_other 0.176 r_chiral_restr 0.154 r_metal_ion_refined 0.149 r_symmetry_hbond_refined 0.134 r_xyhbond_nbd_refined 0.12 r_nbtor_other 0.075 r_bond_refined_d 0.025 r_bond_other_d 0.019 r_gen_planes_refined 0.011 r_gen_planes_other 0.009 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4304 Nucleic Acid Atoms Solvent Atoms 736 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling EPMR phasing REFMAC refinement PDB_EXTRACT data extraction