2NWQ

Short chain dehydrogenase from Pseudomonas aeruginosa


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52980.1M HEPES pH 7.5-8.5, 22% PEG4000, 0.2-0.3M ammonium sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.0640.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.982α = 90
b = 107.92β = 102.92
c = 71.457γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2001-12-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1OTHER

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.330960.07218.754252838911
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.38950.1634.24194

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.3234252838911207195.970.166320.163540.21887RANDOM24.751
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.851.08-0.66-1.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.644
r_dihedral_angle_4_deg17.49
r_dihedral_angle_3_deg16.209
r_dihedral_angle_1_deg5.925
r_scangle_it2.244
r_scbond_it1.456
r_angle_refined_deg1.367
r_mcangle_it0.831
r_mcbond_it0.527
r_symmetry_hbond_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.644
r_dihedral_angle_4_deg17.49
r_dihedral_angle_3_deg16.209
r_dihedral_angle_1_deg5.925
r_scangle_it2.244
r_scbond_it1.456
r_angle_refined_deg1.367
r_mcangle_it0.831
r_mcbond_it0.527
r_symmetry_hbond_refined0.302
r_nbtor_refined0.301
r_nbd_refined0.208
r_xyhbond_nbd_refined0.138
r_symmetry_vdw_refined0.12
r_chiral_restr0.099
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6938
Nucleic Acid Atoms
Solvent Atoms415
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing