2NT3

Receiver domain from Myxococcus xanthus social motility protein FrzS (Y102A Mutant)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION72910.1M MIB buffer pH 7.0, 25% w/v PEG 1500, VAPOR DIFFUSION, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.0239.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.804α = 90
b = 63.804β = 90
c = 46.738γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102006-09-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3201000.0930.093127.7267092670912.057
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.371000.8370.8372.77.428578

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTpdb entry 2gkg1.3202532225322138799.960.133520.133520.131910.16244RANDOM12.977
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.210.10.21-0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.638
r_dihedral_angle_4_deg14.645
r_dihedral_angle_3_deg10.543
r_sphericity_free7.755
r_dihedral_angle_1_deg6.828
r_scangle_it3.653
r_scbond_it2.9
r_sphericity_bonded2.813
r_mcangle_it2.158
r_mcbond_it1.787
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.638
r_dihedral_angle_4_deg14.645
r_dihedral_angle_3_deg10.543
r_sphericity_free7.755
r_dihedral_angle_1_deg6.828
r_scangle_it3.653
r_scbond_it2.9
r_sphericity_bonded2.813
r_mcangle_it2.158
r_mcbond_it1.787
r_angle_refined_deg1.59
r_rigid_bond_restr1.412
r_angle_other_deg0.882
r_mcbond_other0.635
r_symmetry_vdw_other0.294
r_nbd_refined0.234
r_xyhbond_nbd_other0.215
r_xyhbond_nbd_refined0.205
r_nbd_other0.193
r_nbtor_refined0.174
r_symmetry_vdw_refined0.132
r_symmetry_hbond_refined0.123
r_chiral_restr0.107
r_nbtor_other0.086
r_bond_refined_d0.015
r_bond_other_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms910
Nucleic Acid Atoms
Solvent Atoms211
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
EPMRphasing