X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529810%-15% PEG 6000/8000, 0.2-0.5 M calcium acetate, 0.1 M cacodylic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
3.0359.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.671α = 90
b = 98.127β = 90
c = 160.882γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-05-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26CNSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.85073.4252561853822

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.8250252561853899773.40.2440.2440.240.319RANDOM47.649
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
14.92-9.62-5.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.912
r_scangle_it3.731
r_scbond_it2.06
r_mcangle_it1.747
r_angle_refined_deg1.659
r_mcbond_it0.91
r_angle_other_deg0.902
r_symmetry_hbond_refined0.266
r_symmetry_vdw_refined0.26
r_nbd_other0.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.912
r_scangle_it3.731
r_scbond_it2.06
r_mcangle_it1.747
r_angle_refined_deg1.659
r_mcbond_it0.91
r_angle_other_deg0.902
r_symmetry_hbond_refined0.266
r_symmetry_vdw_refined0.26
r_nbd_other0.24
r_nbd_refined0.239
r_symmetry_vdw_other0.211
r_xyhbond_nbd_refined0.184
r_nbtor_other0.096
r_chiral_restr0.081
r_bond_refined_d0.016
r_gen_planes_refined0.005
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6087
Nucleic Acid Atoms
Solvent Atoms13
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction