X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529810%-15% PEG 6000/8000, 0.2-0.5 M calcium acetate, 0.1 M cacodylic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.4148.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.91α = 90
b = 99.359β = 90
c = 104.377γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-10-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26CNSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
135090.2158991509122

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT349.39158991509180890.240.2720.2720.2680.345RANDOM51.663
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.963.28-2.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.725
r_scangle_it4.019
r_scbond_it2.284
r_mcangle_it1.7
r_angle_refined_deg1.426
r_mcbond_it0.873
r_angle_other_deg0.837
r_symmetry_vdw_refined0.335
r_symmetry_vdw_other0.301
r_symmetry_hbond_refined0.28
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.725
r_scangle_it4.019
r_scbond_it2.284
r_mcangle_it1.7
r_angle_refined_deg1.426
r_mcbond_it0.873
r_angle_other_deg0.837
r_symmetry_vdw_refined0.335
r_symmetry_vdw_other0.301
r_symmetry_hbond_refined0.28
r_nbd_other0.243
r_nbd_refined0.235
r_xyhbond_nbd_refined0.193
r_nbtor_other0.091
r_chiral_restr0.075
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5482
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction