SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_15N-separated_NOESY | 4 mM oncomodulin, U-15N, 0.15 M NaCl, 0.01 M Mes, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.15 M NaCl, 0.01 M Mes | 6.0 | 1 atm | 293 | |
| 2 | 3D_13C-separated_NOESY | 4 mM oncomodulin, U-15N, 13C, 0.15 M NaCl, 0.01 M Mes, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.15 M NaCl, 0.01 M Mes | 6.0 | 1 atm | 293 | |
| 3 | 15N-IPAP-HSQC | 4 mM oncomodulin, U-15N, 0.15 M NaCl, 0.01 M Mes, pH 6.0, 13 mg/mL Pf1 bacteriophage, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.15 M NaCl, 0.01 M Mes | 6.0 | 1 atm | 293 | |
| 4 | 15N-HSQC | 4 mM oncomodulin, U-15N, 0.15 M NaCl, 0.01 M Mes, pD 6.2 | 100% D2O | 0.15 M NaCl, 0.01 M Mes | 6.0 | 1 atm | 293 | |
| 5 | HNHA | 4 mM oncomodulin, U-15N, 0.15 M NaCl, 0.01 M Mes, pH 6.0, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.15 M NaCl, 0.01 M Mes | 6.0 | 1 atm | 293 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing using torsion angle molecular dynamics | The structures are based on a total of 2961 restraints: 2553 are NOE-derived distance constraints, 241 are dihedral angle restraints, 74 are distance restraints derived from putative hydrogen bonds, and 93 are angle restraints based on residual dipolar couplings | VNMR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (closest to the average) |
| Additional NMR Experimental Information | |
|---|---|
| Details | This structure was determined using: 1. distance restraints collected from 3D NOESY experiments, 2. dihedral angle restraints based on coupling constants (HNHA), and chemical shift data (CSI, TALOS), 3. hydrogen-bond restraints (collected from H-D exchange measurements), 4. 1H-15N residual dipolar couplings |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | VNMR | varian | |
| 2 | processing | NMRPipe | Delaglio, F. et al. | |
| 3 | data analysis | Sparky | Goddard T.D., Kneller, D.G. | |
| 4 | structure solution | ARIA | 2.0a | Nilges, M. et al. |
| 5 | structure solution | CNS | 1.1 | Brunger, A.T. et al. |
| 6 | refinement | CNS | 1.1 | Brunger, A.T. et al. |














