2NDP
Structure of DNA-binding HU protein from micoplasma Mycoplasma gallisepticum
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 5 M [U-2H] D2O-1, 50 mM sodium phosphate-2, 0.1 mM sodium azide-3 | 95% H2O/5% D2O | 0.375 | 6.7 | ambient | 308 | |
| 2 | 2D 1H-13C HSQC | 5 M [U-2H] D2O-1, 50 mM sodium phosphate-2, 0.1 mM sodium azide-3 | 95% H2O/5% D2O | 0.375 | 6.7 | ambient | 308 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Agilent | Uniform NMR System | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | TALOS++ | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 5000 |
| Conformers Submitted Total Number | 15 |
| Representative Model | 1 (fewest violations) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | TALOS++ | Cornilescu, Delaglio and Bax | |
| 2 | refinement | GROMACS | Herman Berendsen's group, department of Biophysical Chemistry of Groningen University | |
