2NDP | pdb_00002ndp

Structure of DNA-binding HU protein from micoplasma Mycoplasma gallisepticum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d2ndpb_	All alpha proteins	IHF-like DNA-binding proteins	IHF-like DNA-binding proteins	automated matches	automated matches	(Mycoplasmoides gallisepticum S6 ) [TaxId: 1006581 ],	SCOPe (2.08)
A	d2ndpa_	All alpha proteins	IHF-like DNA-binding proteins	IHF-like DNA-binding proteins	automated matches	automated matches	(Mycoplasmoides gallisepticum S6 ) [TaxId: 1006581 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Asp	e2ndpB1	A: a/b three-layered sandwiches	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F: Asp	ECOD (v294.1)
A	Asp	e2ndpA1	A: a/b three-layered sandwiches	X: Type II ABC importer transmembrane domain fold	H: DNA mismatch repair protein MutL regulatory subdomain	T: DNA mismatch repair protein MutL regulatory subdomain	F: Asp	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	4.10.520.10	Few Secondary Structures	Irregular	HU Protein	Chain A	CATH (4.3.0)
A	4.10.520.10	Few Secondary Structures	Irregular	HU Protein	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Histone-like DNA-binding superfamily protein	DNA binding binding nucleic acid binding structural molecule activity structural constituent of chromatin	cellular component organization organelle organization chromosome condensation chromosome organization cellular process cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR010992	Integration host factor (IHF)-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR000119	Histone-like DNA-binding protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.