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Structure of SUMO-2 bound to phosphorylated RAP80 SIM
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 25 7.3 ambient 298 2 3D CBCA(CO)NH 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 25 7.3 ambient 298 3 3D HNCO 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 25 7.3 ambient 298 4 3D HCACO 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 25 7.3 ambient 298 5 3D HNCACB 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 25 7.3 ambient 298 6 2D 1H-13C HSQC aromatic 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 25 7.3 ambient 298 7 2D 1H-1H TOCSY 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 25 7.3 ambient 298 8 2D 1H-1H NOESY 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein 90% H2O/10% D2O 25 7.3 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 800
NMR Refinement Method Details Software molecular dynamics, torsion angle dynamics Sparky
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Sparky 3.113 Goddard 2 data analysis TALOS Cornilescu, Delaglio and Bax 3 structure solution Amber 14 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 4 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 refinement Amber 14 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman