2N9E
Structure of SUMO-2 bound to phosphorylated RAP80 SIM
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 25 | 7.3 | ambient | 298 | |
2 | 3D CBCA(CO)NH | 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 25 | 7.3 | ambient | 298 | |
3 | 3D HNCO | 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 25 | 7.3 | ambient | 298 | |
4 | 3D HCACO | 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 25 | 7.3 | ambient | 298 | |
5 | 3D HNCACB | 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 25 | 7.3 | ambient | 298 | |
6 | 2D 1H-13C HSQC aromatic | 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 25 | 7.3 | ambient | 298 | |
7 | 2D 1H-1H TOCSY | 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 25 | 7.3 | ambient | 298 | |
8 | 2D 1H-1H NOESY | 1.2 mM peptide, 0.4 mM [U-100% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 25 | 7.3 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics, torsion angle dynamics | SPARKY |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | SPARKY | 3.113 | Goddard |
2 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
3 | structure solution | AMBER | 14 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman |
4 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | refinement | AMBER | 14 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman |