SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H COSY2 mM protein_1, 2.5 mM acetic acid90% H2O/10% D2O3.8ambient277
22D 1H-1H TOCSY2 mM protein_1, 2.5 mM acetic acid90% H2O/10% D2O3.8ambient277
32D 1H-1H ROESY2 mM protein_1, 2.5 mM acetic acid90% H2O/10% D2O3.8ambient277
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe authors state that the structures of these peptides in solution are more dynamic than are typical of well-ordered globular proteins such that the ROE intensities represent averages over multiple conformers. However, the authors make the simplifying assumption of there being a single set of structures. One result of this assumption is that reported clash scores are poorer than those typical of standard PDB structures. Warnings about residues that 'are not properly linked' and 'missing atoms' occur where there are non-natural residues and reversals in the chain directions, and there are no real problems with these stretches.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionX-PLOR NIH2.35Schwieters, Kuszewski, Tjandra and Clore
2refinementX-PLOR NIH2.35Schwieters, Kuszewski, Tjandra and Clore