Solution structure of the NDH-1 complex subunit CupS from Thermosynechococcus elongatus
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC/HMQC | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 2 | 2D 1H-13C HSQC/HMQC | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 3 | 3D HNCACB | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 4 | 3D CBCA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 5 | 3D 1H-15N NOESY | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 6 | 3D HBHA(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 7 | 3D H(CCO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 8 | 3D C(CO)NH | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 9 | 3D HNCO | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 10 | 3D HCCH-TOCSY | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 11 | 3D HCCH-COSY | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 12 | 3D 1H-13C NOESY aliphatic | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| 13 | 3D 1H-13C NOESY aromatic | 0.5 mM [U-99% 13C; U-99% 15N] CupS, 50 mM Tris, 50 mM NaCl, 10 mM [U-2H] DTT | 90% H2O/10% D2O | 8.0 | 1 atm | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 950 |
| 2 | Bruker | DRX | 500 |
| 3 | Bruker | DRX | 600 |
| 4 | Bruker | AVANCE | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | including water refinement | CcpNmr Analysis |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 40 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | spectrum analysis | CcpNmr Analysis | 2.2 | CCPN |
| 2 | spectrum display | NMRDraw | any | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 3 | spectrum processing | NMRPipe | any | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 4 | structure solution | NMRPipe | any | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 5 | spectrum processing | NMRPipe | any | Linge, O'Donoghue and Nilges |
| 6 | structure solution | NMRPipe | any | Linge, O'Donoghue and Nilges |
| 7 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 8 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
| 9 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
| 10 | data analysis | TALOS | Linge, O'Donoghue and Nilges | |
| 11 | structure solution | TALOS | Linge, O'Donoghue and Nilges | |
| 12 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
| 13 | structure solution | TALOS | Cornilescu, Delaglio and Bax | |
| 14 | data analysis | TALOS | Linge, O'Donoghue and Nilges | |
| 15 | structure solution | TALOS | Linge, O'Donoghue and Nilges | |
| 16 | refinement | ARIA | ||
