Three-Dimensional Structure and Interaction Studies of Hepatitis C Virus p7 in 1,2-Dihexanoyl-sn-glycero-3-phosphocholine by Solution Nuclear Magnetic Resonance
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N] p7, 125 mM DHPC | 90% H2O/10% D2O | 4.0 | ambient | 323 | ||
| 2 | 3D 1H-15N HSQC NOESY | 0.5 mM [U-100% 13C; U-100% 15N] p7, 125 mM DHPC | 90% H2O/10% D2O | 4.0 | ambient | 323 | ||
| 3 | 2D 1H-15N HSQC | 0.5 mM [U-100% 15N] p7, 125 mM DHPC, 6 % polyacrylamide gel | 90% H2O/10% D2O | 4.0 | ambient | 323 | ||
| 4 | 3D HNCA | 0.5 mM [U-100% 13C; U-100% 15N] p7, 125 mM DHPC | 90% H2O/10% D2O | 4.0 | ambient | 323 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 2 | chemical shift assignment | Sparky | Goddard | |
| 3 | structure solution | CS-ROSETTA | Shen, Vernon, Baker and Bax | |
| 4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
