2MQV | pdb_00002mqv

Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	0.5 mM 15N,13C-Alab U5-PBS-NC, 0.5 mM 15N.13C-Glab U5-PBS-NC, 0.5 mM 15N.13C-Ulab U5-PBS-NC, 0.5 mM 15N.13C-Clab U5-PBS-NC	90% H2O/10% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311
2	2D 1H-13C HSQC	0.5 mM 15N,13C-Alab U5-PBS-NC, 0.5 mM 15N.13C-Glab U5-PBS-NC, 0.5 mM 15N.13C-Ulab U5-PBS-NC, 0.5 mM 15N.13C-Clab U5-PBS-NC	90% H2O/10% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311
3	2D 1H-13C HSQC	0.5 mM 15N,13C-Alab U5-PBS-NC, 0.5 mM 15N.13C-Glab U5-PBS-NC, 0.5 mM 15N.13C-Ulab U5-PBS-NC, 0.5 mM 15N.13C-Clab U5-PBS-NC	90% H2O/10% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311
4	2D 1H-13C HSQC	0.5 mM 15N,13C-Alab U5-PBS-NC, 0.5 mM 15N.13C-Glab U5-PBS-NC, 0.5 mM 15N.13C-Ulab U5-PBS-NC, 0.5 mM 15N.13C-Clab U5-PBS-NC	90% H2O/10% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311
5	2D 1H-13C HSQC	0.5 mM 15N,13C-Alab U5-PBS-NC, 0.5 mM 15N.13C-Glab U5-PBS-NC, 0.5 mM 15N.13C-Ulab U5-PBS-NC, 0.5 mM 15N.13C-Clab U5-PBS-NC	90% H2O/10% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311
6	2D 1H-1H NOESY	1 mM UAUCG-linker	100% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311
7	2D 1H-1H NOESY	0.5 mM U5-PBS-M2-NC	100% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311
8	2D 1H-1H NOESY	0.5 mM 15N,13C-Alab U5-PBS-NC, 0.5 mM 15N.13C-Glab U5-PBS-NC, 0.5 mM 15N.13C-Ulab U5-PBS-NC, 0.5 mM 15N.13C-Clab U5-PBS-NC	90% H2O/10% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311
9	2D 1H-1H NOESY	1 mM UAUCG-linker	100% D2O	10mM Tris, 10mM NaCl	7.0	ambient	288
10	3D 1H-13C NOESY	0.5 mM 15N,13C-Alab U5-PBS-NC, 0.5 mM 15N.13C-Glab U5-PBS-NC, 0.5 mM 15N.13C-Ulab U5-PBS-NC, 0.5 mM 15N.13C-Clab U5-PBS-NC	90% H2O/10% D2O	10mM Tris, 10mM Nacl	7.0	ambient	311

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	DMX	700

NMR Refinement
Method	Details	Software
distance geometry		CYANA

NMR Ensemble Information
Conformer Selection Criteria	structures with acceptable covalent geometry
Conformers Calculated Total Number	1000
Conformers Submitted Total Number	10
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CYANA		Guntert, Mumenthaler and Wuthrich
2	data analysis	CYANA		Guntert, Mumenthaler and Wuthrich
3	processing	CYANA		Guntert, Mumenthaler and Wuthrich
4	refinement	CYANA		Johnson, One Moon Scientific
5	data analysis	CYANA		Johnson, One Moon Scientific
6	processing	CYANA		Johnson, One Moon Scientific
7	refinement	CYANA		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8	data analysis	CYANA		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
9	processing	CYANA		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.