☰ Navigation Tabs
Solution structure of the LysM region of the E. coli Intimin periplasmic domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCO 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 2 3D HNCA 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 3 3D C(CO)NH 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 4 3D HNCANNH 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 5 3D HCCH-TOCSY 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 6 3D H(CCO)NH 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 7 3D 1H-15N NOESY 0.5 mM [U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 8 3D 1H-13C NOESY 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 9 3D CNH-NOESY 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 10 3D NNH-NOESY 0.5 mM [U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 11 3D CCH-NOESY 0.5 mM [U-100% 13C; U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298 12 2D 12C-filtered 1H-1H NOESY 0.5 mM [U-100% 15N] LysM, 20 mM sodium phosphate, 150 mM sodium chloride 90% H2O/10% D2O 250 7.4 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing, NOESY back-calculation TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 95 Conformers Submitted Total Number 23 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 chemical shift assignment Sparky Goddard 4 data analysis Sparky Goddard 5 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 6 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 7 refinement NMR-SPIRIT 1.1 In-house