2MP2
Solution structure of SUMO dimer in complex with SIM2-3 from RNF4
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3 mM [U-99% 13C; U-99% 15N] SUMO 1, 0.3 mM SUMO 2, 1.0 mM RNF4 | 90% H2O/10% D2O | 0.1 | 7.0 | ambient | 303 | |
2 | 2D 1H-15N HSQC | 0.3 mM SUMO 1, 0.3 mM [U-99% 13C; U-99% 15N] SUMO 2, 1.0 mM RNF4 | 90% H2O/10% D2O | 0.1 | 7.0 | ambient | 303 | |
3 | 2D 1H-15N HSQC | 0.3 mM [U-99% 13C; U-99% 15N] SUMO 1, 0.3 mM SUMO 2 | 90% H2O/10% D2O | 0.1 | 7.0 | ambient | 303 | |
4 | 2D 1H-15N HSQC | 0.3 mM SUMO 1, 0.3 mM [U-99% 13C; U-99% 15N] SUMO 2 | 90% H2O/10% D2O | 0.1 | 7.0 | ambient | 303 | |
5 | 3D HNCACB | 0.3 mM [U-99% 13C; U-99% 15N] SUMO 1, 0.3 mM SUMO 2 | 90% H2O/10% D2O | 0.1 | 7.0 | ambient | 303 | |
6 | 3D CBCA(CO)NH | 0.3 mM [U-99% 13C; U-99% 15N] SUMO 1, 0.3 mM SUMO 2 | 90% H2O/10% D2O | 0.1 | 7.0 | ambient | 303 | |
7 | 3D HCCH-TOCSY | 0.3 mM [U-99% 13C; U-99% 15N] SUMO 1, 0.3 mM SUMO 2 | 90% H2O/10% D2O | 0.1 | 7.0 | ambient | 303 | |
8 | 3D 1H-15N NOESY | 0.3 mM [U-99% 13C; U-99% 15N] SUMO 1, 0.3 mM SUMO 2 | 90% H2O/10% D2O | 0.1 | 7.0 | ambient | 303 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 60 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | structure solution | ARIA | Linge, O'Donoghue and Nilges | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
5 | collection | TopSpin | Bruker Biospin | |
6 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |