2MH5 | pdb_00002mh5

Structure and NMR assignments of lantibiotic NAI-107 in DPC micelles

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H TOCSY	3.5 mM entity_1, 150 mM [U-2H] dodecylphosphocholine-d38, 10 mM potassium phosphate, 0.02 mM 2,2,3,3-D TSP-d4	95% H2O/5% D2O		6.2	ambient	310.1
2	2D 1H-1H NOESY	3.5 mM entity_1, 150 mM [U-2H] dodecylphosphocholine-d38, 10 mM potassium phosphate, 0.02 mM 2,2,3,3-D TSP-d4	95% H2O/5% D2O		6.2	ambient	310.1
3	2D 1H-13C HSQC aliphatic	3.5 mM entity_1, 150 mM [U-2H] dodecylphosphocholine-d38, 10 mM potassium phosphate, 0.02 mM 2,2,3,3-D TSP-d4	95% H2O/5% D2O		6.2	ambient	310.1
4	2D 1H-13C HSQC aromatic	3.5 mM entity_1, 150 mM [U-2H] dodecylphosphocholine-d38, 10 mM potassium phosphate, 0.02 mM 2,2,3,3-D TSP-d4	95% H2O/5% D2O		6.2	ambient	310.1

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVIII	600
2	Bruker	AVANCE	900
3	Bruker	DRX	600

NMR Refinement
Method	Details	Software
molecular dynamics	Refinement was done in two steps: first in vacuo and then with explicit micelle/water system. The pseudo atoms labeled ANI are included in the constraint file. These define an alignment frame used in the structural interpretation of rdc data.	TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	80
Conformers Submitted Total Number	20
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	3.1	Bruker Biospin
2	chemical shift assignment	CARA		Keller and Wuthrich
3	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
4	refinement	YASARA		Yasara Biosciences