2MGT | pdb_00002mgt

Zinc induced dimer of the metal binding domain 1-16 of human amyloid beta-peptide with Alzheimer's disease pathogenic English mutation H6R

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	2 mM protein_1-1, 20 mM [U-99% 2H] bis-Tris-2, 40 uM d4 (100%) TSP-3	90% H2O/10% D2O		6.8	ambient	274
2	2D 1H-1H TOCSY	2 mM protein_1-1, 20 mM [U-99% 2H] bis-Tris-2, 40 uM d4 (100%) TSP-3	90% H2O/10% D2O		6.8	ambient	274
3	2D DQF-COSY	2 mM protein_1-1, 20 mM [U-99% 2H] bis-Tris-2, 40 uM d4 (100%) TSP-3	90% H2O/10% D2O		6.8	ambient	274
4	2D 1H-15N HSQC	2 mM protein_1-1, 20 mM [U-99% 2H] bis-Tris-2, 40 uM d4 (100%) TSP-3	90% H2O/10% D2O		6.8	ambient	274
5	2D 1H-13C HSQC	2 mM protein_1-1, 20 mM [U-99% 2H] bis-Tris-2, 40 uM d4 (100%) TSP-3	90% H2O/10% D2O		6.8	ambient	274
6	2D 1H-1H NOESY	2 mM protein_1-4, 20 mM [U-99% 2H] bis-Tris-5, 40 uM d4 (100%) TSP-6	100% D2O			ambient	278
7	2D 1H-1H TOCSY	2 mM protein_1-4, 20 mM [U-99% 2H] bis-Tris-5, 40 uM d4 (100%) TSP-6	100% D2O			ambient	278
8	2D 1H-1H NOESY	2 mM protein_1-7, 1 mM zinc cloride-8, 20 mM [U-99% 2H] bis-Tris-9, 40 uM d4 (100%) TSP-10	90% H2O/10% D2O		6.8	ambient	274
9	2D 1H-1H TOCSY	2 mM protein_1-7, 1 mM zinc cloride-8, 20 mM [U-99% 2H] bis-Tris-9, 40 uM d4 (100%) TSP-10	90% H2O/10% D2O		6.8	ambient	274
10	2D 1H-15N HSQC	2 mM protein_1-7, 1 mM zinc cloride-8, 20 mM [U-99% 2H] bis-Tris-9, 40 uM d4 (100%) TSP-10	90% H2O/10% D2O		6.8	ambient	274
11	2D 1H-13C HSQC	2 mM protein_1-7, 1 mM zinc cloride-8, 20 mM [U-99% 2H] bis-Tris-9, 40 uM d4 (100%) TSP-10	90% H2O/10% D2O		6.8	ambient	274
12	2D 1H-1H NOESY	2 mM protein_1-11, 1 mM zinc cloride-12, 20 mM [U-99% 2H] bis-Tris-13, 40 uM d4 (100%) TSP-14	100% D2O			ambient	278
13	2D 1H-1H TOCSY	2 mM protein_1-11, 1 mM zinc cloride-12, 20 mM [U-99% 2H] bis-Tris-13, 40 uM d4 (100%) TSP-14	100% D2O			ambient	278

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
simulated annealing	Details are in refinement_citation	NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	collection	TopSpin		Bruker Biospin
3	chemical shift assignment	Sparky		Goddard
4	data analysis	NMRest		Polshakov V. I.
5	refinement	GROMACS	4.5.4	Van Der Spoel, Lindahl Hess, Groenhof, Mark and Berendsen
6	geometry optimization	CPMD		CPMD consortium
7	data analysis	PyMOL		DeLano
8	data analysis	Insight II		Accelrys Software Inc.
9	data analysis	ProcheckNMR		Laskowski and MacArthur

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.