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Solution structure of MBD3 methylcytosine binding domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 2 3D CBCA(CO)NH 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 3 3D HNCO 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 4 3D HNCA 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 5 3D HNCACB 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 6 3D HBHA(CO)NH 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 7 3D HCCH-TOCSY 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 8 3D 1H-15N NOESY 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 9 3D 1H-13C NOESY aliphatic 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298 10 3D 1H-13C NOESY aromatic 0.5-1.0 mM [U-99% 13C; U-99% 15N] MBD3 90% H2O/10% D2O 20 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis CCPN Vranken, Boucher, Stevens, Fogh, Pajon, Llinas, Ulrich, Markley, Ionides, and Laue 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore