2LUH | pdb_00002luh

NMR structure of the Vta1-Vps60 complex

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
2	2D 1H-15N HSQC	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
3	2D 1H-13C HSQC aliphatic	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	100% D2O	0.15	7.0	ambient	293.15
4	2D 1H-13C HSQC aliphatic	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	100% D2O	0.15	7.0	ambient	293.15
5	2D 1H-13C HSQC aromatic	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	100% D2O	0.15	7.0	ambient	293.15
6	2D 1H-13C HSQC aromatic	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	100% D2O	0.15	7.0	ambient	293.15
7	3D CBCA(CO)NH	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
8	3D CBCA(CO)NH	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
9	3D HNCO	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
10	3D HNCO	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
11	3D HNCA	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
12	3D HNCA	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
13	3D HNCACB	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
14	3D HNCACB	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
15	3D HN(CO)CA	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
16	3D HN(CO)CA	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
17	3D HCCH-TOCSY	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	100% D2O	0.15	7.0	ambient	293.15
18	3D HCCH-TOCSY	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	100% D2O	0.15	7.0	ambient	293.15
19	3D 1H-15N NOESY	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
20	3D 1H-15N NOESY	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	90% H2O/10% D2O	0.15	7.0	ambient	293.15
21	3D 1H-13C NOESY aliphatic	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	100% D2O	0.15	7.0	ambient	293.15
22	3D 1H-13C NOESY aliphatic	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	100% D2O	0.15	7.0	ambient	293.15
23	3D 1H-13C NOESY aromatic	1.0-1.2 mM [U-13C; U-15N] protein_1, 1.0-1.2 mM protein_2	100% D2O	0.15	7.0	ambient	293.15
24	3D 1H-13C NOESY aromatic	1.0-1.2 mM protein_1, 1.0-1.2 mM [U-13C; U-15N] protein_2	100% D2O	0.15	7.0	ambient	293.15

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	X-PLOR NIH	NIH	Schwieters, Kuszewski, Tjandra and Clore
2	refinement	X-PLOR NIH	NIH	Schwieters, Kuszewski, Tjandra and Clore
3	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	chemical shift assignment	Sparky		Goddard
5	peak picking	Sparky		Goddard
6	data analysis	TALOS		Cornilescu, Delaglio and Bax
7	collection	VnmrJ		Varian
8	structure analysis	ProcheckNMR		Laskowski and MacArthur