2LUH | pdb_00002luh

NMR structure of the Vta1-Vps60 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Vta1-like	8093243	3002693	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF4488	e2luhB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: hypothetical protein BACOVA_00364	T: hypothetical protein BACOVA_00364	F: DUF4488	ECOD (v294.1)
A	Vta1	e2luhA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Vta1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	6.10.250.1710	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	1.25.40.270	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Vacuolar protein sorting-associated protein vta1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF03357	Snf7 (Snf7)	Snf7	-	Family
A	PF04652	Vta1 like (Vta1)	Vta1 like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Vacuolar protein-sorting-associated protein 60	-	membrane organization vesicle budding from membrane transport establishment of localization vesicle-mediated transport cellular component organization vesicle organization localization organelle organization cellular process cellular component organization or biogenesis cellular localization intracellular transport endosomal transport membrane organization vesicle budding from membrane transport establishment of localization vesicle-mediated transport cellular component organization vesicle organization localization organelle organization cellular process cellular component organization or biogenesis cellular localization intracellular transport endosomal transport intercellular transport late endosome to vacuole transport late endosome to vacuole transport via multivesicular body sorting pathway multivesicular body sorting pathway establishment of localization in cell vacuolar transport endosome transport via multivesicular body sorting pathway establishment of protein localization protein transport macromolecule localization intracellular protein localization	endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle endosome membrane membrane-bounded organelle intracellular anatomical structure membrane endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane vacuolar membrane storage vacuole lytic vacuole vacuole fungal-type vacuole lytic vacuole membrane fungal-type vacuole membrane late endosome multivesicular body
A	Vacuolar protein sorting-associated protein VTA1	ATPase activator activity molecular function activator activity molecular function regulator activity protein-macromolecule adaptor activity molecular adaptor activity	cellular localization transport intracellular transport establishment of localization vesicle-mediated transport localization intercellular transport late endosome to vacuole transport establishment of localization in cell cellular process vacuolar transport endosomal transport late endosome to vacuole transport via multivesicular body sorting pathway multivesicular body sorting pathway cellular localization transport intracellular transport establishment of localization vesicle-mediated transport localization intercellular transport late endosome to vacuole transport establishment of localization in cell cellular process vacuolar transport endosomal transport late endosome to vacuole transport via multivesicular body sorting pathway multivesicular body sorting pathway endosome transport via multivesicular body sorting pathway macromolecule localization lipid localization lipid transport establishment of protein localization protein transport intracellular protein localization	membrane-bounded organelle endosome membrane protein-containing complex ATPase complex intracellular anatomical structure intracellular vesicle membrane protein complex endomembrane system intracellular organelle cellular anatomical structure bounding membrane of organelle cytoplasmic vesicle vesicle membrane vesicle membrane-bounded organelle endosome membrane protein-containing complex ATPase complex intracellular anatomical structure intracellular vesicle membrane protein complex endomembrane system intracellular organelle cellular anatomical structure bounding membrane of organelle cytoplasmic vesicle vesicle membrane vesicle catalytic complex ESCRT complex endosome membrane intracellular membrane-bounded organelle cytoplasmic vesicle membrane organelle ESCRT IV complex cytoplasm organelle membrane late endosome multivesicular body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR005024	Snf7 family	Family
A	IPR039431	Vta1/callose synthase, N-terminal	Domain
A	IPR023175	Vta1/Callose synthase, N-terminal domain superfamily	Homologous Superfamily
A	IPR041212	Vta1, C-terminal	Domain
A	IPR044538	Vacuolar protein sorting-associated protein Vta1-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.