2LR6 | pdb_00002lr6

NMR structure of a LINE-1 type transposase domain-containing protein 1 (L1TD1) from Homo sapiens

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate	95% H2O/5% D2O	0.185	6.0	ambient	298
2	3D 1H-15N NOESY	1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate	95% H2O/5% D2O	0.185	6.0	ambient	298
3	3D 1H-13C NOESY aliphatic	1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate	95% H2O/5% D2O	0.185	6.0	ambient	298
4	3D 1H-13C NOESY aromatic	1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate	95% H2O/5% D2O	0.185	6.0	ambient	298
5	APSY 5D-HACACONH	1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate	95% H2O/5% D2O	0.185	6.0	ambient	298
6	APSY 5D-CBCACONH	1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate	95% H2O/5% D2O	0.185	6.0	ambient	298
7	ASPY 4D-HACANH	1.2 mM [U-98% 13C; U-98% 15N] protein, 5 mM sodium azide, 50 mM sodium chloride, 25 mM sodium phosphate	95% H2O/5% D2O	0.185	6.0	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	80
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger A. T. et.al.
2	structure solution	CYANA		Guntert, Mumenthaler and Wuthrich
3	processing	TopSpin		Bruker Biospin
4	collection	TopSpin		Bruker Biospin
5	chemical shift assignment	UNIO		UNIO Herrmann and Wuthrich
6	structure solution	UNIO		UNIO Herrmann and Wuthrich
7	chemical shift assignment	CARA		Keller and Wuthrich
8	data analysis	CARA		Keller and Wuthrich

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.