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Solution structure of human J-protein co-chaperone, Dph4
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 2 2D 1H-15N HSQC 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 3 2D 1H-13C HSQC 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 4 3D HNCACB 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 5 3D CBCA(CO)NH 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 6 3D 1H-13C NOESY 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 7 3D 1H-15N NOESY 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 8 3D H(CCO)NH-TOCSY 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 9 3D CBCA(CO)NH 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 10 3D (H)C(CO)NH-TOCSY 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 11 3D HNCO 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 12 3D HBHA(CBCACO)NH 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 13 GFT (3,2)D HA(CA)CO(N)H 1mM [U-13C; U-15N] Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 ambient 298 14 GFT (4,3)D NOESY-HCCH 1mM Dph4 polypeptide; 1mM Zn; 80mM sodium chloride; 20mM TRIS; 100% D2O 100% D2O 7.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700 2 Bruker AVANCE 500
NMR Refinement Method Details Software simulated annealing, torsion angle dynamics XEASY
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest target function)
Computation: NMR Software # Classification Version Software Name Author 1 peak picking XEASY Bartels et al. 2 chemical shift assignment XEASY Bartels et al. 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 collection XwinNMR Bruker Biospin 6 structure solution CYANA Guntert, Mumenthaler and Wuthrich 7 refinement CYANA Guntert, Mumenthaler and Wuthrich