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Three dimensional structure of HuPrP(90-231 M129 Q212P)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1 90% H2O/10% D2O 150 NaCl 5.5 ambient 298 2 3D HNCO 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1 90% H2O/10% D2O 150 NaCl 5.5 ambient 298 3 3D HNCA 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1 90% H2O/10% D2O 150 NaCl 5.5 ambient 298 4 3D CBCA(CO)NH 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1 90% H2O/10% D2O 150 NaCl 5.5 ambient 298 5 3D HNCACB 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1 90% H2O/10% D2O 150 NaCl 5.5 ambient 298 6 3D HN(CO)CA 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1 90% H2O/10% D2O 150 NaCl 5.5 ambient 298 7 3D 1H-15N NOESY 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1 90% H2O/10% D2O 150 NaCl 5.5 ambient 298 8 3D HBHA(CO)NH 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-1 90% H2O/10% D2O 150 NaCl 5.5 ambient 298 9 3D 1H-13C NOESY 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-2 100% D2O 150 NaCl ambient 298 10 3D CCH-TOCSY 1.0 mM [U-98% 13C; U-98% 15N] PrP(Q212P)-2 100% D2O 150 NaCl ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian Uniform NMR System 800 2 Varian Uniform NMR System 700
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 chemical shift assignment Sparky Goddard 3 data analysis Sparky Goddard 4 peak picking Sparky Goddard 5 structure solution CYANA Guntert, Mumenthaler and Wuthrich 6 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 7 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 8 chemical shift assignment CARA Keller and Wuthrich