2KK0
Solution structure of dead ringer-like protein 1 (at-rich interactive domain-containing protein 3a) from homo sapiens, northeast structural genomics consortium (NESG) target hr4394c
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.95 mM [U-10% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
4 | 3D HNCO | 0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
5 | 3D HNCACB | 0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
6 | 3D 1H-13C NOESY | 0.92 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | 0.2 | 6.5 | ambient | 298 | |
7 | 3D HBHA(CO)NH | 0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
8 | 3D H(CCO)NH | 0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 | |
9 | 3D HCCH-COSY | 0.92 mM [U-100% 13C; U-100% 15N] protein | 100% D2O | 0.2 | 6.5 | ambient | 298 | |
10 | 3D 1H-13C-15N simutaneous NOESY | 0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O | 95% H2O/5% D2O | 0.2 | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics, distance geometry, simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
2 | refinement | AutoStructure | 1.2 | Huang, Tejero, Powers and Montelione |
3 | data analysis | AutoStructure | 1.2 | Huang, Tejero, Powers and Montelione |
4 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
5 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
6 | geometry optimization | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
7 | chemical shift assignment | AutoAssign | 2.1 | Zimmerman, Moseley, Kulikowski and Montelione |
8 | chemical shift assignment | XEASY | 1.3 | Bartels et al. |
9 | data analysis | XEASY | 1.3 | Bartels et al. |
10 | peak picking | XEASY | 1.3 | Bartels et al. |
11 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
12 | collection | TopSpin | Bruker Biospin | |
13 | collection | VnmrJ | Varian |