2KK0 | pdb_00002kk0

Solution structure of dead ringer-like protein 1 (at-rich interactive domain-containing protein 3a) from homo sapiens, northeast structural genomics consortium (NESG) target hr4394c

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O	95% H2O/5% D2O	0.2	6.5	ambient	298
2	2D 1H-13C HSQC	0.95 mM [U-10% 13C; U-100% 15N] protein	95% H2O/5% D2O	0.2	6.5	ambient	298
3	3D CBCA(CO)NH	0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O	95% H2O/5% D2O	0.2	6.5	ambient	298
4	3D HNCO	0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O	95% H2O/5% D2O	0.2	6.5	ambient	298
5	3D HNCACB	0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O	95% H2O/5% D2O	0.2	6.5	ambient	298
6	3D 1H-13C NOESY	0.92 mM [U-100% 13C; U-100% 15N] protein	100% D2O	0.2	6.5	ambient	298
7	3D HBHA(CO)NH	0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O	95% H2O/5% D2O	0.2	6.5	ambient	298
8	3D H(CCO)NH	0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O	95% H2O/5% D2O	0.2	6.5	ambient	298
9	3D HCCH-COSY	0.92 mM [U-100% 13C; U-100% 15N] protein	100% D2O	0.2	6.5	ambient	298
10	3D 1H-13C-15N simutaneous NOESY	0.92 mM [U-100% 13C; U-100% 15N] protein 95% H2O/5% D2O	95% H2O/5% D2O	0.2	6.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
molecular dynamics, distance geometry, simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (fewest violations)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
2	refinement	AutoStructure	1.2	Huang, Tejero, Powers and Montelione
3	data analysis	AutoStructure	1.2	Huang, Tejero, Powers and Montelione
4	refinement	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
5	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
6	geometry optimization	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
7	chemical shift assignment	AutoAssign	2.1	Zimmerman, Moseley, Kulikowski and Montelione
8	chemical shift assignment	XEASY	1.3	Bartels et al.
9	data analysis	XEASY	1.3	Bartels et al.
10	peak picking	XEASY	1.3	Bartels et al.
11	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
12	collection	TopSpin		Bruker Biospin
13	collection	VnmrJ		Varian