2K42
Solution Structure of the GTPase Binding Domain of WASP in Complex with EspFU, an EHEC Effector
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D HNCACB | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
2 | 3D CBCA(CO)NH | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
3 | 3D HCCH-TOCSY | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 100% D2O | 6.8 | ambient | 298.15 | ||
4 | 2D 1H-15N HSQC | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
5 | 3D 1H-15N NOESY | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
6 | 3D HNCO | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
7 | 4D 13C-13C NOESY | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 100% D2O | 6.8 | ambient | 298.15 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Varian | INOVA | 500 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 2.1 | Linge, O'Donoghue and Nilges |
2 | refinement | ARIA | 2.1 | Linge, O'Donoghue and Nilges |
3 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
4 | peak picking | NMRView | Johnson, One Moon Scientific | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |