Solution Structure of the GTPase Binding Domain of WASP in Complex with EspFU, an EHEC Effector
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D HNCACB | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
| 2 | 3D CBCA(CO)NH | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
| 3 | 3D HCCH-TOCSY | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 100% D2O | 6.8 | ambient | 298.15 | ||
| 4 | 2D 1H-15N HSQC | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
| 5 | 3D 1H-15N NOESY | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
| 6 | 3D HNCO | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 90% H2O/10% D2O | 6.8 | ambient | 298.15 | ||
| 7 | 4D 13C-13C NOESY | 1~1.5 mM [U-100% 13C; U-100% 15N] GBD/R33 complex | 100% D2O | 6.8 | ambient | 298.15 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | ARIA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | ARIA | 2.1 | Linge, O'Donoghue and Nilges |
| 2 | refinement | ARIA | 2.1 | Linge, O'Donoghue and Nilges |
| 3 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 4 | peak picking | NMRView | Johnson, One Moon Scientific | |
| 5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
