SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide95% H2O/5% D2O5.5ambient298
23D CBCA(CO)NH1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide95% H2O/5% D2O5.5ambient298
33D HNCO1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide95% H2O/5% D2O5.5ambient298
43D HNCACB1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide95% H2O/5% D2O5.5ambient298
53D HCCH-TOCSY1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide95% H2O/5% D2O5.5ambient298
63D HNHA1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide95% H2O/5% D2O5.5ambient298
73D 1H-15N NOESY1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide95% H2O/5% D2O5.5ambient298
83D 1H-13C NOESY1-2 mM [U-98% 13C; U-98% 15N] act ACP, 5% D2O, 95% H2O, 20 mM potassium phosphate, 1 mM sodium azide95% H2O/5% D2O5.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealingAll structure calculations were carried out using the Ambiguous Restraints for Iterative Assignment of NOEs (ARIA) protocol Version 1.2, which includes an algorithm that attempts to correct for the effects of spin diffusion, was use. Torsion Angle Likelihood Obtained from Shift and sequence similarity (TALOS) and was used to predict φ and ψ dihedral angle restraints. Initially, structure calculation runs contained 8 iterations of 20 structures each, with the best 7 structures in each iteration (sorted according to total energy) being used for analysis and assignment. The number of dynamics steps was increased over default values to 20000 and 16000 for the first and second cooling stages respectively. After each run, violated restraints were checked, and those arising from noise peaks or incorrect assignments were removed/reassigned. Final ensembles of 100 structures were calculated from calibrated restraint tables. The 20 best structures (sorted according to total energy) were selected for water refinement. Water refined structures were calculated using the slightly modified refinement script applied to the RECOORD database. PROCHECK and WHATCHECK and quality indicators were compared to the average values for the RECOORD database of protein NMR structures.ARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Additional NMR Experimental Information
DetailsThe structure was determined using a combination of NOE data (ambiguous and unambiguous as determined by ARIA) combined with J-coupling and TALOS dihedral restraints
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionARIA1.2Linge, O'Donoghue and Nilges
2processingARIA1.2Linge, O'Donoghue and Nilges
3refinementARIA1.2Linge, O'Donoghue and Nilges