Solution NMR structure of Q8ZP25_SALTY from Salmonella typhimurium. Northeast Structural Genomics Consortium target StR70
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | GFT (4,3)D HNNCABCA | 1.2 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| 2 | GFT(4,3)D CABA(CO)NHN | 1.2 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| 3 | GFT(4,3)D HABCAB(CO)NHN | 1.2 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| 4 | GFT(4,3)D HCCH COSY | 1.2 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| 5 | Sim 13C,15N-Resolved NOESY | 1.2 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| 6 | 2D 1H-15N HSQC | 1.2 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| 7 | 2D 1H-13C HSQC | 1.2 mM [U-100% 13C; U-100% 15N] protein | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| 8 | 2D 1H-13C HSQC | 1.0 mM 5% 13C; 100% 15N protein | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| 9 | 2D 1H-15N HSQC | 1 mM [U-5% 13C; U-100% 15N] protein, 15.5 mg/mL phage | 95% H2O/5% D2O | 50 | 6.0 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| 2 | Varian | INOVA | 750 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | Constrained simulated annealing torsion angle molecular dynamics refinement using xplor, and rdcs refinement using cns and water bath | CNS |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | Brunger A. T. et.al. | |
| 2 | data analysis | DYANA | 1.5 | Guntert, Braun and Wuthrich |
| 3 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 4 | collection | VNMR | 6.1C | Varian |
| 5 | peak picking | XEASY | 1.3 | Bartels et al. |
| 6 | processing | NMRPipe | 2.3 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
| 7 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
| 8 | structure solution | AutoStructure | Huang, Tejero, Powers and Montelione | |
| 9 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
