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Solution structure of 50S ribosomal protein LX from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium (NESG) target TR80
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D SIMULTANEOUS CN-NOESY 1.07 mM [U-100% 13C; U-100% 15N] 50S protein 90% H2O/10% D2O 6.5 ambient 298 2 2D 1H-15N HSQC 1.07 mM [U-100% 13C; U-100% 15N] 50S protein 90% H2O/10% D2O 6.5 ambient 298 3 3D HNCO 1.07 mM [U-100% 13C; U-100% 15N] 50S protein 90% H2O/10% D2O 6.5 ambient 298 4 4,3D GFT CABCACONHN 1.07 mM [U-100% 13C; U-100% 15N] 50S protein 90% H2O/10% D2O 6.5 ambient 298 5 4,3D GFT HNNCABCA 1.07 mM [U-100% 13C; U-100% 15N] 50S protein 90% H2O/10% D2O 6.5 ambient 298 6 4,3D GFT HCCH 1.07 mM [U-100% 13C; U-100% 15N] 50S protein 90% H2O/10% D2O 6.5 ambient 298 7 4,3D GFT HABCABCONHN 1.07 mM [U-100% 13C; U-100% 15N] 50S protein 90% H2O/10% D2O 6.5 ambient 298 8 2D 1H-13C HSQC 1.1 mM [U-10% 13C; U-100% 15N] protein 90% H2O/10% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Varian INOVA 600
NMR Refinement Method Details Software molecular dynamics, simulated annealing, distance geometry, torsion angle dynamics CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 data analysis CYANA 2.1 Guntert, Mumenthaler and Wuthrich 4 data analysis AutoStructure 2.0.0 Huang, Tejero, Powers and Montelione 5 chemical shift assignment AutoAssign Zimmerman, Moseley, Kulikowski and Montelione 6 chemical shift assignment XEASY Bartels et al. 7 data analysis XEASY Bartels et al. 8 collection TopSpin Bruker Biospin 9 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 10 collection VNMR Varian