Solution structure of 50S ribosomal protein LX from Methanobacterium thermoautotrophicum. Northeast Structural Genomics Consortium (NESG) target TR80
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D SIMULTANEOUS CN-NOESY | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 2 | 2D 1H-15N HSQC | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 3 | 3D HNCO | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 4 | 4,3D GFT CABCACONHN | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 5 | 4,3D GFT HNNCABCA | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 6 | 4,3D GFT HCCH | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 7 | 4,3D GFT HABCABCONHN | 1.07 mM [U-100% 13C; U-100% 15N] 50S protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| 8 | 2D 1H-13C HSQC | 1.1 mM [U-10% 13C; U-100% 15N] protein | 90% H2O/10% D2O | 6.5 | ambient | 298 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| 2 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics, simulated annealing, distance geometry, torsion angle dynamics | CNS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
| 2 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 3 | data analysis | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
| 4 | data analysis | AutoStructure | 2.0.0 | Huang, Tejero, Powers and Montelione |
| 5 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione | |
| 6 | chemical shift assignment | XEASY | Bartels et al. | |
| 7 | data analysis | XEASY | Bartels et al. | |
| 8 | collection | TopSpin | Bruker Biospin | |
| 9 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 10 | collection | VNMR | Varian | |
